With its huge assortment of plugins Eclipse provides the flexible and extensible software services for the wide range of systems biology users. For example, less mathematically inclined biologists can take advantage of the wizards, dialogs and validating editors; while more computationally literate users can use the C++ or Java IDE to develop computational models directly.
In my talk I'll give an overview of the aims and scope of systems biology, its demands for novel software, and describe how Eclipse technology has been used to develop applications for pathway visualization, process algebra modelling, and in particular, model optimisation.
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